HL_9Q1Q_034

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGGCCAUGGAAGUCGCAAUC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|5|G|1973
9Q1Q|1|5|U|1974
9Q1Q|1|5|G|1975
9Q1Q|1|5|G|1976
9Q1Q|1|5|C|1977
9Q1Q|1|5|C|1978
9Q1Q|1|5|A|1979
9Q1Q|1|5|U|1980
9Q1Q|1|5|G|1981
9Q1Q|1|5|G|1982
9Q1Q|1|5|A|1983
9Q1Q|1|5|A|1984
9Q1Q|1|5|G|1985
9Q1Q|1|5|U|1986
9Q1Q|1|5|C|1987
9Q1Q|1|5|G|1988
9Q1Q|1|5|C|1989
9Q1Q|1|5|A|1990
9Q1Q|1|5|A|1991
9Q1Q|1|5|U|1992
9Q1Q|1|5|C|1993

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

uL11