HL_9Q1Q_036
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAGUCGACAGUGCGAGAAAGCGAGUGGCGCGGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 9Q1Q|1|5|C|2094, 9Q1Q|1|5|C|2258, 9Q1Q|1|5|G|2259, 9Q1Q|1|5|U|2267, 9Q1Q|1|5|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|5|C|2087
9Q1Q|1|5|A|2088
9Q1Q|1|5|G|2089
9Q1Q|1|5|U|2090
9Q1Q|1|5|C|2091
9Q1Q|1|5|G|2092
9Q1Q|1|5|A|2093
9Q1Q|1|5|C|2094
9Q1Q|1|5|A|2095
9Q1Q|1|5|G|2096
9Q1Q|1|5|U|2097
9Q1Q|1|5|G|2098
9Q1Q|1|5|C|2099
9Q1Q|1|5|G|2100
9Q1Q|1|5|A|2101
9Q1Q|1|5|G|2102
9Q1Q|1|5|A|2103
9Q1Q|1|5|A|2104
9Q1Q|1|5|A|2105
9Q1Q|1|5|G|2106
9Q1Q|1|5|C|2107
9Q1Q|1|5|G|2108
9Q1Q|1|5|A|2109
9Q1Q|1|5|G|2110
9Q1Q|1|5|U|2111
9Q1Q|1|5|G|2112
9Q1Q|1|5|G|2113
9Q1Q|1|5|C|2258
9Q1Q|1|5|G|2259
9Q1Q|1|5|C|2260
9Q1Q|1|5|G|2261
9Q1Q|1|5|G|2262
9Q1Q|1|5|A|2263
9Q1Q|1|5|C|2264
9Q1Q|1|5|G|2265
9Q1Q|1|5|C|2266
9Q1Q|1|5|U|2267
9Q1Q|1|5|A|2268
9Q1Q|1|5|C|2269
9Q1Q|1|5|G|2270
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- Large ribosomal subunit protein eL6
- Chain F
- 60S ribosomal protein L7
- Chain Q
- eL18
- Chain b
- eL29
- Chain e
- eL32
- Chain r
- 60S ribosomal protein L28
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