HL_9Q1Q_037

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1Q_037 not in the Motif Atlas

Homologous match to HL_9AXU_027

Geometric discrepancy: 0.2209

The information below is about HL_9AXU_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9Q1Q|1|5|C|2317
9Q1Q|1|5|G|2318
9Q1Q|1|5|C|2319
9Q1Q|1|5|G|2320
9Q1Q|1|5|G|2321
9Q1Q|1|5|G|2322

Current chains

Chain 5

28S rRNA

Nearby chains

Chain e

eL32

Chain r

60S ribosomal protein L28