HL_9Q1Q_069

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1Q_069 not in the Motif Atlas

Homologous match to HL_9H3G_064

Geometric discrepancy: 0.1584

The information below is about HL_9H3G_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9Q1Q|1|5|U|4497
9Q1Q|1|5|U|4498
9Q1Q|1|5|G|4499
9Q1Q|1|5|U|4500
9Q1Q|1|5|U|4501
9Q1Q|1|5|C|4502
9Q1Q|1|5|A|4503

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3