HL_9Q1Q_084
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- 9Q1Q|1|9|U|9
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1Q_084 not in the Motif Atlas
- Homologous match to HL_9PN5_077
- Geometric discrepancy: 0.1388
- The information below is about HL_9PN5_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.3
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9Q1Q|1|9|G|7
9Q1Q|1|9|U|8
9Q1Q|1|9|U|9
9Q1Q|1|9|G|10
9Q1Q|1|9|A|11
9Q1Q|1|9|U|12
9Q1Q|1|9|C|13
9Q1Q|1|9|C|14
9Q1Q|1|9|U|15
9Q1Q|1|9|G|16
9Q1Q|1|9|C|17
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain 1
- NediV IRES
- Chain CC
- 40S ribosomal protein S2
- Chain XX
- 40S ribosomal protein S23
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