HL_9Q1Q_095

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1Q_095 not in the Motif Atlas

Geometric match to HL_8B0X_084

Geometric discrepancy: 0.2495

The information below is about HL_8B0X_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Q1Q|1|9|C|539
9Q1Q|1|9|U|540
9Q1Q|1|9|U|541
9Q1Q|1|9|U|542
9Q1Q|1|9|C|543
9Q1Q|1|9|G|544

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains