HL_9Q1Q_105

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1Q_105 not in the Motif Atlas

Homologous match to HL_9H3G_097

Geometric discrepancy: 0.1294

The information below is about HL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Q1Q|1|9|G|1141
9Q1Q|1|9|G|1142
9Q1Q|1|9|A|1143
9Q1Q|1|9|A|1144
9Q1Q|1|9|A|1145
9Q1Q|1|9|C|1146

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain CC

40S ribosomal protein S2

Chain WW

40S ribosomal protein S15a

Chain aa

eS26