HL_9Q1S_001

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUUAGUAAAUAAUUGGGAUUCCCCCUAUG

Length

30 nucleotides

Bulged bases

9Q1S|1|1|U|1353, 9Q1S|1|1|A|1355, 9Q1S|1|1|A|1359, 9Q1S|1|1|A|1360, 9Q1S|1|1|U|1361, 9Q1S|1|1|U|1364, 9Q1S|1|1|U|1371, 9Q1S|1|1|C|1372, 9Q1S|1|1|C|1376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|1|U|1351
9Q1S|1|1|U|1352
9Q1S|1|1|U|1353
9Q1S|1|1|U|1354
9Q1S|1|1|A|1355
9Q1S|1|1|G|1356
9Q1S|1|1|U|1357
9Q1S|1|1|A|1358
9Q1S|1|1|A|1359
9Q1S|1|1|A|1360
9Q1S|1|1|U|1361
9Q1S|1|1|A|1362
9Q1S|1|1|A|1363
9Q1S|1|1|U|1364
9Q1S|1|1|U|1365
9Q1S|1|1|G|1366
9Q1S|1|1|G|1367
9Q1S|1|1|G|1368
9Q1S|1|1|A|1369
9Q1S|1|1|U|1370
9Q1S|1|1|U|1371
9Q1S|1|1|C|1372
9Q1S|1|1|C|1373
9Q1S|1|1|C|1374
9Q1S|1|1|C|1375
9Q1S|1|1|C|1376
9Q1S|1|1|U|1377
9Q1S|1|1|A|1378
9Q1S|1|1|U|1379
9Q1S|1|1|G|1380

Current chains

Chain 1

NediV IRES

Nearby chains