HL_9Q1S_002
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAAGCAGCUUGUAUAUAG
- Length
- 19 nucleotides
- Bulged bases
- 9Q1S|1|1|A|1483, 9Q1S|1|1|U|1484, 9Q1S|1|1|A|1487
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|1|C|1470
9Q1S|1|1|A|1471
9Q1S|1|1|A|1472
9Q1S|1|1|A|1473
9Q1S|1|1|G|1474
9Q1S|1|1|C|1475
9Q1S|1|1|A|1476
9Q1S|1|1|G|1477
9Q1S|1|1|C|1478
9Q1S|1|1|U|1479
9Q1S|1|1|U|1480
9Q1S|1|1|G|1481
9Q1S|1|1|U|1482
9Q1S|1|1|A|1483
9Q1S|1|1|U|1484
9Q1S|1|1|A|1485
9Q1S|1|1|U|1486
9Q1S|1|1|A|1487
9Q1S|1|1|G|1488
Current chains
- Chain 1
- NediV IRES
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain FF
- Small ribosomal subunit protein uS7
- Chain OO
- Small ribosomal subunit protein uS11
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