HL_9Q1S_045

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

9Q1S|1|5|C|2709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1S_045 not in the Motif Atlas

Geometric match to HL_8OI5_032

Geometric discrepancy: 0.3524

The information below is about HL_8OI5_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9Q1S|1|5|G|2705
9Q1S|1|5|G|2706
9Q1S|1|5|U|2707
9Q1S|1|5|U|2708
9Q1S|1|5|C|2709
9Q1S|1|5|C|2710

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain X

Large ribosomal subunit protein uL23