HL_9Q1S_052
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9Q1S|1|5|A|3642, 9Q1S|1|5|A|3643, 9Q1S|1|5|U|3644, 9Q1S|1|5|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1S_052 not in the Motif Atlas
- Homologous match to HL_9H3G_049
- Geometric discrepancy: 0.1442
- The information below is about HL_9H3G_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.4
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 11
Unit IDs
9Q1S|1|5|U|3639
9Q1S|1|5|U|3640
9Q1S|1|5|U|3641
9Q1S|1|5|A|3642
9Q1S|1|5|A|3643
9Q1S|1|5|U|3644
9Q1S|1|5|U|3645
9Q1S|1|5|A|3646
9Q1S|1|5|A|3647
9Q1S|1|5|A|3648
9Q1S|1|5|A|3649
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain j
- 60S ribosomal protein L37
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