HL_9Q1S_056
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 9Q1S|1|5|U|3802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1S_056 not in the Motif Atlas
- Homologous match to HL_8GLP_054
- Geometric discrepancy: 0.27
- The information below is about HL_8GLP_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77449.4
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
9Q1S|1|5|U|3796
9Q1S|1|5|C|3797
9Q1S|1|5|U|3798
9Q1S|1|5|A|3799
9Q1S|1|5|A|3800
9Q1S|1|5|U|3801
9Q1S|1|5|U|3802
9Q1S|1|5|A|3803
9Q1S|1|5|G|3804
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain V
- Large ribosomal subunit protein uL14
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