HL_9Q1S_061
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1S_061 not in the Motif Atlas
- Homologous match to HL_8GLP_062
- Geometric discrepancy: 0.2185
- The information below is about HL_8GLP_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 33
Unit IDs
9Q1S|1|5|C|4270
9Q1S|1|5|A|4271
9Q1S|1|5|G|4272
9Q1S|1|5|A|4273
9Q1S|1|5|A|4274
9Q1S|1|5|G|4275
9Q1S|1|5|G|4276
9Q1S|1|5|G|4277
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain I
- Ribosomal protein L10
- Chain T
- 60S ribosomal protein L21
- Chain o
- eL42
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