HL_9Q1S_099

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

9Q1S|1|9|U|888, 9Q1S|1|9|U|889, 9Q1S|1|9|U|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|9|U|885
9Q1S|1|9|A|886
9Q1S|1|9|U|887
9Q1S|1|9|U|888
9Q1S|1|9|U|889
9Q1S|1|9|U|890
9Q1S|1|9|G|891
9Q1S|1|9|U|892
9Q1S|1|9|U|893
9Q1S|1|9|G|894
9Q1S|1|9|G|895
9Q1S|1|9|U|896
9Q1S|1|9|U|897
9Q1S|1|9|U|898
9Q1S|1|9|U|899
9Q1S|1|9|C|900
9Q1S|1|9|G|901

Current chains

Chain 9

18S rRNA

Nearby chains