HL_9Q1S_101
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1S_101 not in the Motif Atlas
- Homologous match to HL_9H3G_094
- Geometric discrepancy: 0.102
- The information below is about HL_9H3G_094
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 456
Unit IDs
9Q1S|1|9|C|994
9Q1S|1|9|G|995
9Q1S|1|9|A|996
9Q1S|1|9|A|997
9Q1S|1|9|A|998
9Q1S|1|9|G|999
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain NN
- 40S ribosomal protein S13
- Chain aa
- eS26
Coloring options: