HL_9Q2M_105

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9Q2M|1|9|U|1316, 9Q2M|1|9|G|1318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2M|1|9|A|1311
9Q2M|1|9|U|1312
9Q2M|1|9|U|1313
9Q2M|1|9|G|1314
9Q2M|1|9|A|1315
9Q2M|1|9|U|1316
9Q2M|1|9|A|1317
9Q2M|1|9|G|1318
9Q2M|1|9|C|1319
9Q2M|1|9|U|1320

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

Small ribosomal subunit protein uS19

Chain dd

40S ribosomal protein S29

Chain ff

40S ribosomal protein S27a