HL_9Q2M_107

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9Q2M|1|9|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2M_107 not in the Motif Atlas

Homologous match to HL_9PN5_104

Geometric discrepancy: 0.1728

The information below is about HL_9PN5_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9Q2M|1|9|G|1382
9Q2M|1|9|U|1383
9Q2M|1|9|U|1384
9Q2M|1|9|A|1385
9Q2M|1|9|A|1386
9Q2M|1|9|U|1387
9Q2M|1|9|U|1388
9Q2M|1|9|C|1389

Current chains

Chain 9

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein S17