HL_9Q2M_109

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

9Q2M|1|9|U|1468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2M_109 not in the Motif Atlas

Geometric match to HL_8GLP_113

Geometric discrepancy: 0.3958

The information below is about HL_8GLP_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.5

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

9Q2M|1|9|C|1466
9Q2M|1|9|G|1467
9Q2M|1|9|U|1468
9Q2M|1|9|U|1469
9Q2M|1|9|C|1470
9Q2M|1|9|A|1471
9Q2M|1|9|G|1472

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

40S_SA_C domain-containing protein

Chain RR

40S ribosomal protein S17