HL_9Q2M_111

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9Q2M|1|9|U|1627, 9Q2M|1|9|U|1628, 9Q2M|1|9|A|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2M|1|9|A|1620
9Q2M|1|9|U|1621
9Q2M|1|9|U|1622
9Q2M|1|9|G|1623
9Q2M|1|9|C|1624
9Q2M|1|9|A|1625
9Q2M|1|9|A|1626
9Q2M|1|9|U|1627
9Q2M|1|9|U|1628
9Q2M|1|9|A|1629
9Q2M|1|9|U|1630
9Q2M|1|9|U|1631

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18

Chain TT

Small ribosomal subunit protein eS19

Chain dd

40S ribosomal protein S29