HL_9Q2M_114

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCAAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2M_114 not in the Motif Atlas

Homologous match to HL_7UZ0_003

Geometric discrepancy: 0.207

The information below is about HL_7UZ0_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9Q2M|1|ET|G|53
9Q2M|1|ET|U|54
9Q2M|1|ET|U|55
9Q2M|1|ET|C|56
9Q2M|1|ET|A|57
9Q2M|1|ET|A|58
9Q2M|1|ET|U|59
9Q2M|1|ET|C|60
9Q2M|1|ET|C|61

Current chains

Chain ET

E site Ala-tRNA

Nearby chains