HL_9Q2O_001

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUAAAUAAUUGGGAUUCCCCC

Length

21 nucleotides

Bulged bases

9Q2O|1|1|A|1358, 9Q2O|1|1|U|1361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|1|G|1356
9Q2O|1|1|U|1357
9Q2O|1|1|A|1358
9Q2O|1|1|A|1359
9Q2O|1|1|A|1360
9Q2O|1|1|U|1361
9Q2O|1|1|A|1362
9Q2O|1|1|A|1363
9Q2O|1|1|U|1364
9Q2O|1|1|U|1365
9Q2O|1|1|G|1366
9Q2O|1|1|G|1367
9Q2O|1|1|G|1368
9Q2O|1|1|A|1369
9Q2O|1|1|U|1370
9Q2O|1|1|U|1371
9Q2O|1|1|C|1372
9Q2O|1|1|C|1373
9Q2O|1|1|C|1374
9Q2O|1|1|C|1375
9Q2O|1|1|C|1376

Current chains

Chain 1

NediV IRES

Nearby chains