HL_9Q2O_004

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCUUUGGGACAAAG

Length

14 nucleotides

Bulged bases

9Q2O|1|1|G|1466, 9Q2O|1|1|A|1471

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|1|C|1461
9Q2O|1|1|C|1462
9Q2O|1|1|U|1463
9Q2O|1|1|U|1464
9Q2O|1|1|U|1465
9Q2O|1|1|G|1466
9Q2O|1|1|G|1467
9Q2O|1|1|G|1468
9Q2O|1|1|A|1469
9Q2O|1|1|C|1470
9Q2O|1|1|A|1471
9Q2O|1|1|A|1472
9Q2O|1|1|A|1473
9Q2O|1|1|G|1474

Current chains

Chain 1

NediV IRES

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain PP

Small ribosomal subunit protein uS19

Chain QQ

Small ribosomal subunit protein uS9