HL_9Q2O_007
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q2O_007 not in the Motif Atlas
- Homologous match to HL_8GLP_003
- Geometric discrepancy: 0.1504
- The information below is about HL_8GLP_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76371.5
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9Q2O|1|5|C|89
9Q2O|1|5|G|90
9Q2O|1|5|G|91
9Q2O|1|5|C|92
9Q2O|1|5|G|93
9Q2O|1|5|A|94
9Q2O|1|5|G|95
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein eL13
- Chain Q
- Large ribosomal subunit protein eL18
- Chain a
- 60S ribosomal protein L27a
- Chain o
- eL42
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