HL_9Q2O_008

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9Q2O|1|5|G|134, 9Q2O|1|5|G|135, 9Q2O|1|5|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2O_008 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.2949

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.5

Basepair signature

cWW-F-F

Number of instances in this motif group

21

Unit IDs

9Q2O|1|5|C|131
9Q2O|1|5|G|132
9Q2O|1|5|C|133
9Q2O|1|5|G|134
9Q2O|1|5|G|135
9Q2O|1|5|C|136
9Q2O|1|5|G|137

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35

Chain j

60S ribosomal protein L37