HL_9Q2O_021

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2O_021 not in the Motif Atlas

Homologous match to HL_8GLP_018

Geometric discrepancy: 0.2109

The information below is about HL_8GLP_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9Q2O|1|5|U|1389
9Q2O|1|5|G|1390
9Q2O|1|5|A|1391
9Q2O|1|5|A|1392
9Q2O|1|5|G|1393
9Q2O|1|5|G|1394

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein eL13

Chain Q

Large ribosomal subunit protein eL18

Chain a

60S ribosomal protein L27a

Chain i

60S ribosomal protein L36