HL_9Q2O_034

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAGUCGACAGUGCGAGAAAGCGAGUGGCGCGGACGCUACG

Length

40 nucleotides

Bulged bases

9Q2O|1|5|C|2094, 9Q2O|1|5|U|2097, 9Q2O|1|5|C|2266, 9Q2O|1|5|U|2267, 9Q2O|1|5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|C|2087
9Q2O|1|5|A|2088
9Q2O|1|5|G|2089
9Q2O|1|5|U|2090
9Q2O|1|5|C|2091
9Q2O|1|5|G|2092
9Q2O|1|5|A|2093
9Q2O|1|5|C|2094
9Q2O|1|5|A|2095
9Q2O|1|5|G|2096
9Q2O|1|5|U|2097
9Q2O|1|5|G|2098
9Q2O|1|5|C|2099
9Q2O|1|5|G|2100
9Q2O|1|5|A|2101
9Q2O|1|5|G|2102
9Q2O|1|5|A|2103
9Q2O|1|5|A|2104
9Q2O|1|5|A|2105
9Q2O|1|5|G|2106
9Q2O|1|5|C|2107
9Q2O|1|5|G|2108
9Q2O|1|5|A|2109
9Q2O|1|5|G|2110
9Q2O|1|5|U|2111
9Q2O|1|5|G|2112
9Q2O|1|5|G|2113
9Q2O|1|5|C|2258
9Q2O|1|5|G|2259
9Q2O|1|5|C|2260
9Q2O|1|5|G|2261
9Q2O|1|5|G|2262
9Q2O|1|5|A|2263
9Q2O|1|5|C|2264
9Q2O|1|5|G|2265
9Q2O|1|5|C|2266
9Q2O|1|5|U|2267
9Q2O|1|5|A|2268
9Q2O|1|5|C|2269
9Q2O|1|5|G|2270

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

60S ribosomal protein L7

Chain Q

Large ribosomal subunit protein eL18

Chain b

eL29

Chain r

60S ribosomal protein L28