HL_9Q2O_049

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9Q2O|1|5|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2O_049 not in the Motif Atlas

Homologous match to HL_8GLP_047

Geometric discrepancy: 0.1637

The information below is about HL_8GLP_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9Q2O|1|5|C|2872
9Q2O|1|5|U|2873
9Q2O|1|5|U|2874
9Q2O|1|5|C|2875
9Q2O|1|5|G|2876
9Q2O|1|5|G|2877

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41

Chain p

60S ribosomal protein L37a