HL_9Q2O_052

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

9Q2O|1|5|A|3642, 9Q2O|1|5|A|3643, 9Q2O|1|5|U|3644, 9Q2O|1|5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|U|3639
9Q2O|1|5|U|3640
9Q2O|1|5|U|3641
9Q2O|1|5|A|3642
9Q2O|1|5|A|3643
9Q2O|1|5|U|3644
9Q2O|1|5|U|3645
9Q2O|1|5|A|3646
9Q2O|1|5|A|3647
9Q2O|1|5|A|3648
9Q2O|1|5|A|3649

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain P

60S ribosomal protein L17

Chain j

60S ribosomal protein L37