HL_9Q2O_094

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCUUUCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2O_094 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2931

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9Q2O|1|9|U|538
9Q2O|1|9|C|539
9Q2O|1|9|U|540
9Q2O|1|9|U|541
9Q2O|1|9|U|542
9Q2O|1|9|C|543
9Q2O|1|9|G|544
9Q2O|1|9|A|545

Current chains

Chain 9

18S rRNA

Nearby chains