HL_9Q2O_107

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9Q2O|1|9|U|1300, 9Q2O|1|9|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2O_107 not in the Motif Atlas

Homologous match to HL_9H3G_100

Geometric discrepancy: 0.4259

The information below is about HL_9H3G_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.6

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9Q2O|1|9|A|1295
9Q2O|1|9|U|1296
9Q2O|1|9|U|1297
9Q2O|1|9|G|1298
9Q2O|1|9|A|1299
9Q2O|1|9|U|1300
9Q2O|1|9|A|1301
9Q2O|1|9|G|1302
9Q2O|1|9|C|1303
9Q2O|1|9|U|1304

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

Small ribosomal subunit protein uS19

Chain dd

40S ribosomal protein S29

Chain ff

40S ribosomal protein S27a