HL_9Q2O_110

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCCG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2O_110 not in the Motif Atlas

Geometric match to HL_8S95_003

Geometric discrepancy: 0.3642

The information below is about HL_8S95_003

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_34080.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

9Q2O|1|9|C|1416
9Q2O|1|9|C|1417
9Q2O|1|9|C|1423
9Q2O|1|9|G|1424

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

Small ribosomal subunit protein uS9

Chain TT

Small ribosomal subunit protein eS19