HL_9Q2P_004

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGUGUUAG

Length

9 nucleotides

Bulged bases

9Q2P|1|3|U|16, 9Q2P|1|3|G|18, 9Q2P|1|3|U|19, 9Q2P|1|3|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2P_004 not in the Motif Atlas

Homologous match to HL_5AXM_001

Geometric discrepancy: 0.1633

The information below is about HL_5AXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9Q2P|1|3|C|13
9Q2P|1|3|A|14
9Q2P|1|3|G|15
9Q2P|1|3|U|16
9Q2P|1|3|G|18
9Q2P|1|3|U|19
9Q2P|1|3|U|20
9Q2P|1|3|A|21
9Q2P|1|3|G|22

Current chains

Chain 3

tRNA

Nearby chains

Chain BB

40S ribosomal protein S3a