HL_9Q2P_010

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9Q2P|1|5|G|134, 9Q2P|1|5|G|135, 9Q2P|1|5|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2P_010 not in the Motif Atlas

Geometric match to HL_9BZC_001

Geometric discrepancy: 0.2972

The information below is about HL_9BZC_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9Q2P|1|5|C|131
9Q2P|1|5|G|132
9Q2P|1|5|C|133
9Q2P|1|5|G|134
9Q2P|1|5|G|135
9Q2P|1|5|C|136
9Q2P|1|5|G|137

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35

Chain j

60S ribosomal protein L37