HL_9Q2P_038

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2P_038 not in the Motif Atlas

Homologous match to HL_8GLP_033

Geometric discrepancy: 0.1573

The information below is about HL_8GLP_033

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9Q2P|1|5|A|2376
9Q2P|1|5|C|2377
9Q2P|1|5|G|2378
9Q2P|1|5|A|2379
9Q2P|1|5|G|2380
9Q2P|1|5|A|2381
9Q2P|1|5|A|2382
9Q2P|1|5|C|2383
9Q2P|1|5|U|2384

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain d

60S ribosomal protein L31