HL_9Q2P_083

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

9Q2P|1|8|U|110, 9Q2P|1|8|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2P_083 not in the Motif Atlas

Homologous match to HL_8GLP_080

Geometric discrepancy: 0.4012

The information below is about HL_8GLP_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

16

Unit IDs

9Q2P|1|8|C|107
9Q2P|1|8|A|108
9Q2P|1|8|C|109
9Q2P|1|8|U|110
9Q2P|1|8|U|111
9Q2P|1|8|G|112

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

Large ribosomal subunit protein uL23

Chain j

60S ribosomal protein L37

Chain l

60S ribosomal protein L39