HL_9Q2P_095

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9Q2P|1|9|A|500, 9Q2P|1|9|C|502, 9Q2P|1|9|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2P_095 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.2047

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9Q2P|1|9|C|498
9Q2P|1|9|G|499
9Q2P|1|9|A|500
9Q2P|1|9|C|501
9Q2P|1|9|C|502
9Q2P|1|9|C|503
9Q2P|1|9|G|504

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain YY

40S ribosomal protein S24