HL_9Q2P_102

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2P|1|9|A|957
9Q2P|1|9|G|958
9Q2P|1|9|G|959
9Q2P|1|9|U|960
9Q2P|1|9|G|961
9Q2P|1|9|A|962
9Q2P|1|9|A|963
9Q2P|1|9|A|964
9Q2P|1|9|U|965
9Q2P|1|9|U|966

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 1

NediV ORF

Chain 3

Transfer RNA; tRNA

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain FF

Small ribosomal subunit protein uS7

Chain OO

Small ribosomal subunit protein uS11