HL_9Q2P_106

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2P_106 not in the Motif Atlas

Homologous match to HL_9H3G_097

Geometric discrepancy: 0.1646

The information below is about HL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Q2P|1|9|G|1141
9Q2P|1|9|G|1142
9Q2P|1|9|A|1143
9Q2P|1|9|A|1144
9Q2P|1|9|A|1145
9Q2P|1|9|C|1146

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain WW

40S ribosomal protein S15a

Chain aa

eS26