HL_9Q2P_109
3D structure
- PDB id
- 9Q2P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 9Q2P|1|9|U|1300, 9Q2P|1|9|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q2P_109 not in the Motif Atlas
- Homologous match to HL_9H3G_100
- Geometric discrepancy: 0.3663
- The information below is about HL_9H3G_100
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9Q2P|1|9|A|1295
9Q2P|1|9|U|1296
9Q2P|1|9|U|1297
9Q2P|1|9|G|1298
9Q2P|1|9|A|1299
9Q2P|1|9|U|1300
9Q2P|1|9|A|1301
9Q2P|1|9|G|1302
9Q2P|1|9|C|1303
9Q2P|1|9|U|1304
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain PP
- Small ribosomal subunit protein uS19
- Chain dd
- 40S ribosomal protein S29
- Chain ff
- 40S ribosomal protein S27a
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