HL_9Q2T_004

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGCCCAAAGCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|1|C|1458
9Q2T|1|1|U|1459
9Q2T|1|1|G|1460
9Q2T|1|1|C|1461
9Q2T|1|1|C|1462
9Q2T|1|1|C|1470
9Q2T|1|1|A|1471
9Q2T|1|1|A|1472
9Q2T|1|1|A|1473
9Q2T|1|1|G|1474
9Q2T|1|1|C|1475
9Q2T|1|1|A|1476
9Q2T|1|1|G|1477

Current chains

Chain 1

NediV IRES

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain OO

Small ribosomal subunit protein uS11

Chain PT

Transfer RNA; tRNA