HL_9Q2T_010

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

9Q2T|1|5|U|224, 9Q2T|1|5|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2T_010 not in the Motif Atlas

Homologous match to HL_8GLP_006

Geometric discrepancy: 0.118

The information below is about HL_8GLP_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.11

Basepair signature

cWW-F

Number of instances in this motif group

25

Unit IDs

9Q2T|1|5|C|222
9Q2T|1|5|G|223
9Q2T|1|5|U|224
9Q2T|1|5|G|225
9Q2T|1|5|G|226

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

60S ribosomal protein L26