HL_9Q2T_012
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 9Q2T|1|5|G|294, 9Q2T|1|5|A|295, 9Q2T|1|5|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q2T_012 not in the Motif Atlas
- Homologous match to HL_8GLP_008
- Geometric discrepancy: 0.1254
- The information below is about HL_8GLP_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_63894.5
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 25
Unit IDs
9Q2T|1|5|C|289
9Q2T|1|5|U|290
9Q2T|1|5|U|291
9Q2T|1|5|G|292
9Q2T|1|5|G|293
9Q2T|1|5|G|294
9Q2T|1|5|A|295
9Q2T|1|5|A|296
9Q2T|1|5|U|297
9Q2T|1|5|G|298
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- 60S ribosomal protein L15
- Chain Q
- Large ribosomal subunit protein eL18
- Chain a
- 60S ribosomal protein L27a
- Chain o
- eL42
Coloring options: