HL_9Q2T_022

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCUUCCAGUCCG

Length

12 nucleotides

Bulged bases

9Q2T|1|5|U|1440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|5|C|1436
9Q2T|1|5|C|1437
9Q2T|1|5|U|1438
9Q2T|1|5|U|1440
9Q2T|1|5|C|1441
9Q2T|1|5|C|1442
9Q2T|1|5|A|1443
9Q2T|1|5|G|1444
9Q2T|1|5|U|1445
9Q2T|1|5|C|1446
9Q2T|1|5|C|1447
9Q2T|1|5|G|1448

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain F

60S ribosomal protein L7

Chain Q

Large ribosomal subunit protein eL18

Chain b

Large ribosomal subunit protein eL29