Loop HL_9Q2T

3D structure

PDB id: 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
Description: NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

Loop

Sequence: CAGUCGACAGUGCGAGAAAGCGAGUGGCGCGGACGCUACG
Length: 40 nucleotides
Bulged bases: 9Q2T|1|5|C|2094, 9Q2T|1|5|U|2097, 9Q2T|1|5|C|2266, 9Q2T|1|5|U|2267, 9Q2T|1|5|C|2269
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9Q2T|1|5|C|2087
9Q2T|1|5|A|2088
9Q2T|1|5|G|2089
9Q2T|1|5|U|2090
9Q2T|1|5|C|2091
9Q2T|1|5|G|2092
9Q2T|1|5|A|2093
9Q2T|1|5|C|2094
9Q2T|1|5|A|2095
9Q2T|1|5|G|2096
9Q2T|1|5|U|2097
9Q2T|1|5|G|2098
9Q2T|1|5|C|2099
9Q2T|1|5|G|2100
9Q2T|1|5|A|2101
9Q2T|1|5|G|2102
9Q2T|1|5|A|2103
9Q2T|1|5|A|2104
9Q2T|1|5|A|2105
9Q2T|1|5|G|2106
9Q2T|1|5|C|2107
9Q2T|1|5|G|2108
9Q2T|1|5|A|2109
9Q2T|1|5|G|2110
9Q2T|1|5|U|2111
9Q2T|1|5|G|2112
9Q2T|1|5|G|2113
9Q2T|1|5|C|2258
9Q2T|1|5|G|2259
9Q2T|1|5|C|2260
9Q2T|1|5|G|2261
9Q2T|1|5|G|2262
9Q2T|1|5|A|2263
9Q2T|1|5|C|2264
9Q2T|1|5|G|2265
9Q2T|1|5|C|2266
9Q2T|1|5|U|2267
9Q2T|1|5|A|2268
9Q2T|1|5|C|2269
9Q2T|1|5|G|2270

Current chains

Chain 5: 28S rRNA

Nearby chains

Chain C: 60S ribosomal protein L4
Chain E: Large ribosomal subunit protein eL6
Chain F: 60S ribosomal protein L7
Chain Q: Large ribosomal subunit protein eL18
Chain b: Large ribosomal subunit protein eL29
Chain e: Large ribosomal subunit protein eL32
Chain r: 60S ribosomal protein L28

HL_9Q2T_034