HL_9Q2T_099

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

9Q2T|1|9|U|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|9|U|885
9Q2T|1|9|A|886
9Q2T|1|9|U|887
9Q2T|1|9|U|888
9Q2T|1|9|U|889
9Q2T|1|9|U|890
9Q2T|1|9|G|891
9Q2T|1|9|U|892
9Q2T|1|9|U|893
9Q2T|1|9|G|894
9Q2T|1|9|G|895
9Q2T|1|9|U|896
9Q2T|1|9|U|897
9Q2T|1|9|U|898
9Q2T|1|9|U|899
9Q2T|1|9|C|900
9Q2T|1|9|G|901

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain LL

Small ribosomal subunit protein uS17