HL_9Q2T_105
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UGCAAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q2T_105 not in the Motif Atlas
- Homologous match to HL_9PN5_100
- Geometric discrepancy: 0.1695
- The information below is about HL_9PN5_100
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 456
Unit IDs
9Q2T|1|9|U|1178
9Q2T|1|9|G|1179
9Q2T|1|9|C|1180
9Q2T|1|9|A|1181
9Q2T|1|9|A|1182
9Q2T|1|9|A|1183
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- eL41
- Chain p
- 60S ribosomal protein L37a
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