HL_9Q2T_107

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9Q2T|1|9|U|1300, 9Q2T|1|9|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|9|A|1295
9Q2T|1|9|U|1296
9Q2T|1|9|U|1297
9Q2T|1|9|G|1298
9Q2T|1|9|A|1299
9Q2T|1|9|U|1300
9Q2T|1|9|A|1301
9Q2T|1|9|G|1302
9Q2T|1|9|C|1303
9Q2T|1|9|U|1304

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

Small ribosomal subunit protein uS19

Chain dd

40S ribosomal protein S29

Chain ff

40S ribosomal protein S27a