HL_9Q3Q_061

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q3Q_061 not in the Motif Atlas

Homologous match to HL_8B0X_089

Geometric discrepancy: 0.0525

The information below is about HL_8B0X_089

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9Q3Q|1|A|C|2551
9Q3Q|1|A|OMU|2552
9Q3Q|1|A|G|2553
9Q3Q|1|A|U|2554
9Q3Q|1|A|U|2555
9Q3Q|1|A|C|2556
9Q3Q|1|A|G|2557

Current chains

Chain A

23S Ribosomal RNA

Nearby chains