HL_9Q3Q_087

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q3Q_087 not in the Motif Atlas

Homologous match to HL_8B0X_015

Geometric discrepancy: 0.0492

The information below is about HL_8B0X_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Q3Q|1|a|C|726
9Q3Q|1|a|G|727
9Q3Q|1|a|A|728
9Q3Q|1|a|A|729
9Q3Q|1|a|G|730
9Q3Q|1|a|G|731

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain o

Small ribosomal subunit protein uS15

Chain u

Small ribosomal subunit protein bS21