HL_9Q6Q_026

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6Q_026 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2199

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9Q6Q|1|1A|G|978
9Q6Q|1|1A|G|979
9Q6Q|1|1A|A|980
9Q6Q|1|1A|A|981
9Q6Q|1|1A|C|982
9Q6Q|1|1A|A|983
9Q6Q|1|1A|A|984
9Q6Q|1|1A|C|985

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1U

50S ribosomal protein L20